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R. solanacearum model versions
| Network Type | Name | Version | Link |
|---|---|---|---|
| Metabolic network | iRP1476 | 1.0 |
|
| Regulatory network | reg_iRP1476 | 1.0 |
|
Model propagation results
| Organism | Source | Metabolic model name | Metabolic model data | Proteome | Result of the propagation |
|---|---|---|---|---|---|
| Ralstonia eutropha | Park et al., 2011 | RehMBEL1391 |
|
FASTA |
|
| Escherichia coli | Orth et al., 2011 | iJO1366 |
|
FASTA |
|
| Bacillus subtilis | Oh et al., 2007 | Bs_iYO844 |
|
FASTA |
|
| Pseudomonas aeruginosa | Oberhardt et al., 2011 | iMO1086 |
|
FASTA |
|
| Ralstonia solanacearum | FASTA |
Model reconciliation results
| Organism | Source | Metabolic model name | Result of the reconciliation |
|---|---|---|---|
| Ralstonia eutropha | Park et al., 2011 | RehMBEL1391 |
|
| Escherichia coli | Orth et al., 2011 | iJO1366 |
|
| Bacillus subtilis | Oh et al., 2007 | Bs_iYO844 |
|
| Pseudomonas aeruginosa | Oberhardt et al., 2011 | iMO1086 |
|
| Ralstonia solanacearum merged draft |
|
Identification of orthologous proteins in species related to R. solanacearum
| Data | Link |
|---|---|
| OrthoMcl Analysis | Family-Companion link |
| TrpD2 phylogenetic tree | Itol link |
| TrpC2 phylogenetic tree | Itol link |
Experimental data
| Data | Link |
|---|---|
| Biolog data | Raw data |
| Mutant data | Mutant database |