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FATAL automates the deployment of web portals required for analyzing sequence functions. It focuses on the analysis of
transcript sequences (typically EST Clusters) and their corresponding peptides but can be used to analyze any sequence
dataset.
Principle : from a set of sequence data and a configuration file, FATAL builds a set of shell scripts in order to :
- compute analyses, store and index results
- generate a web portal with standard bioinformatics tools (browser, search engine, blast and patscan servers).
FATAL is written in PERL and uses scripts/libraries developped at LIPM (http://lipm-bioinfo.toulouse.inra.fr).
Data are stored into Lucene indices and BerkeleyDB files : no need to install any RDBMS.
FATAL has been used for different public proteome analyses (http://iant.toulouse.inra.fr/L.japonicus ,
http://iant.toulouse.inra.fr/G.max ) and private several RNA-seq projects (http://www.heliagene.org/P.halstedii,
http://www.heliagene.org/P.viticola ).
FATAL has been written in the frame of BIOS project (http://bios.toulouse.inra.fr).
This web site is dedicated to peole who want to test FATAL on short datasets of proteins before install and use it
on huge clusters/proteins datasets.
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