Plateforme Bioinformatique LIPM-SPE

Jérôme Gouzy, Emmanuel Courcelle, Sébastien Carrere, Erika Sallet, Ludovic Cottret et al.

[Publications]   [Posters]

Bioinformatics resources

	Narcisse: a mirror view of conserved syntenies collaboration with Thomas Faraut - Laboratoire de Genetique Cellulaire download Narcisse
	LeARN: a platform for annotating, clustering and editing ncRNA collaboration with Christine Gaspin and Thomas Schiex - Unite de Biometrie et Intelligence Artificielle
	Remora: a web server implemented according to the BioMoby web-service specifications, providing life science researchers with an easy-to-use workflow generator and launcher, a repository of predefined workflows and a survey system.
	FrameDP: sensitive peptide detection on noisy matured sequences collaboration with Thomas Schiex - Unite de Biometrie et Intelligence Artificielle
	LEGOO: a bioinformatics gateway towards integrative legume biology
	HeliaGene: a bioinformatics portal for Helianthus sp. genomics

Specialized databases and tools

Bacteria Direct access to public resources using keyword:

Sinorhizobium meliloti genome browser Ralstonia solanacearum genome browser Mesorhizobium loti str. R7A Symbiotic Island browser Xanthomonas sp. portal Methylobacterium extorquens strains portal Spiroplasma citri genome browser Bacteria@LIPM: LIPM bacteria portal

Plants Direct access to public resources using keyword:

Medicago truncatula 3.5 proteome Glycin max proteome Lotus japonicus proteome Genbank Fabaceae proteome Helianthus sp. portal Cichorium sp. portal Rosa chinensis portal [authentication required] Alopecurus myosuroides portal [authentication required]

Oomycetes Direct access to public resources using keyword:

Helianthus and Plasmopara sp. portal Plasmopara halstedii portal [authentication required] Plasmopara viticola portal [authentication required] Plasmopara species portal [authentication required]

Computer science resources

	Paraloop: l'interface d'accès aux ressources de calculs
	Cours C++: Introduction au C++ et à la programmation objet
	BioMOBY::Perl Web-services development framework
	BioMOBY Resources (web-services and tools)
	Mobyle portal: a portal for bioinformatics analyses.
	FATAL: Functional Analyses porTAL

Intranet

	Knowledge: la base de connaissances
	BDMI: Base de Donnees de Mutants d'Insertion
PhylArray	Base de donnees pour les puces phylogenie de R. solanacearum